Description

Subworkflow with functionality that may be useful for any Nextflow pipeline

Input

name
description
pattern

Print the version of the pipeline and exit

dump_parameters

Dump the parameters of the pipeline to a JSON file

output_directory

Path to output dir to write JSON file to.

results/

check_conda_channel

Check if the conda channel priority is correct.

Output

name
description
pattern

dummy_emit

Dummy emit to make nf-core subworkflows lint happy

included in
abotyperairrflowampliseqbacassbamtofastqcellpaintingchipseqcircrnacoproidcreatepanelrefscreatetaxdbcrisprseqdatasyncdeepmodeloptimdemodemultiplexdenovotranscriptdetaxizerdifferentialabundancediseasemodulediscoverydropdrugresponseevalepitopepredictionevexplorerfastqrepairfastquorumfetchngsfuncscangenomeassemblergenomeqcgwashlatypingisoseqlncpipelsmquantmagmagmapmcmicromeerpipemetaboignitermetapepmetatdenovomethylarraymethylongmethylseqmhcquantmitodetectmolkartmultiplesequencealignnanostringnascentoncoanalyserpacvarpairgenomealignpangenomepathogensurveillancephaseimputephyloplacepixelatorproteinannotatorproteinfamiliesproteinfoldrangelandrarediseaserarevariantburdenreadsimulatorreferencesreporthoribomsqcriboseqrnadnavarrnafusionrnaseqrnavarsammyseqsarekscdownstreamscnanoseqscrnaseqseqinspectorsmrnaseqspatialvispatialxestableexpressiontaxprofilertbanalyzertfactivitytroughgraphvariantbenchmarkingviralmetagenome
included modules and subworkflows
maintainers
Github user adamrtalbot
Github user drpatelh
Github user maxulysse
get in touch
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